11 使用パッケージ
11.1 必須
11.1.1 全般
- remotes
- usethis
- installr
- rstudioapi
- fs
- here
- eply
- MilesMcBain/breakerofchains
11.1.2 パッケージ管理
- BiocManager
- pacman
11.1.3 データ分析
- tidyverse
- openxlsx
- dummies
- data.table
11.1.4 統計解析
- tidymodels
- survival
- survminer
11.1.5 表
- tableone
- gt
- gtsummary
- DT
- flextable
- ftExtra
11.1.6 グラフ・可視化
- DiagrammeR
- DiagrammeRsvg
- psych
- summarytools
- skimr
- DataExplorer
- ggsignif
- patchwork
- VennDiagram
11.1.7 R Markdown
- rmarkdown
- revealjs
- knitr
- rmdformats
11.1.8 アプリ
- Shiny
- rsconnect
- shinycssloaders
11.1.9 スクレイピング
- rvest
11.1.10 Reproducible
- datapasta
11.1.11 Docker
- docker
- liftr
install.packages(c(
"remotes", "usethis", "installr", "rstudioapi", "fs", "eply", "here",
"BiocManager", "pacman",
"tidyverse", "openxlsx", "dummies", "data.table",
"tidymodels", "survival", "survminer",
"tableone", "gt", "gtsummary", "DT", "flextable", "ftExtra",
"DiagrammeR", "DiagrammeRsvg", "psych", "summarytools", "skimr", "DataExplorer", "ggsignif", "patchwork", "VennDiagram",
"rmarkdown", "revealjs", "knitr", "rmdformats",
"Shiny", "rsconnect", "shinycssloaders",
"rvest",
"datapasta",
"docker", "liftr"
), dependencies=TRUE)
remotes::install_github("MilesMcBain/breakerofchains")11.2 推奨
11.2.1 汎用
- devtools
- reticulate
- codicR
- conflicted
- lintr
- drake
11.2.2 並列処理
- doParallel
11.2.3 R学習
- swirl
- learnr
11.2.4 グラフ
- ggsci
- ggrepel
- GGally
- officer
- stargazer
- myprettyreport
- corrplot
- corrr
- plotly
11.2.5 RStan
- rstan
11.2.6 LaTeX
- tinytex
11.2.7 SAS
- SASmarkdown
11.2.8 疫学
- Epi
- epiR
- comorbidity
- icd
- ggdag
11.2.9 データ分析・機械学習
- smartdata
- bit64
11.2.10 スクレイピング
- RSelenium
11.2.11 時間計測
- tictoc
11.2.12 資料作成
- xaringan
- export
- INWTlab/ireports
- remotes::install_github(“INWTlab/ireports”)
11.2.13 アドイン
- colourPicker
- colourPicker
- ggThemeAssist
- ggplot Theme Assistant
- styler
- style active file